{
  "_id": "6abe2c4099f7aa8c6aa5333d",
  "Type": "Package",
  "Package": "queryup",
  "Title": "Query the 'UniProtKB' REST API",
  "Version": "1.0.5",
  "Authors@R": "person(\"Guillaume\", \"Voisinne\", , \"voisinne@gmail.com\", role = c(\"aut\", \"cre\"),\ncomment = c(ORCID = \"0000-0003-3922-2121\"))",
  "Maintainer": "Guillaume Voisinne <voisinne@gmail.com>",
  "Description": "Retrieve protein information from the 'UniProtKB' REST API\n(see <https://www.uniprot.org/help/api_queries>).",
  "License": "GPL-3",
  "URL": "https://github.com/VoisinneG/queryup",
  "BugReports": "https://github.com/VoisinneG/queryup/issues",
  "Config/testthat/edition": "3",
  "Encoding": "UTF-8",
  "LazyData": "true",
  "RoxygenNote": "7.1.2",
  "VignetteBuilder": "knitr",
  "Config/pak/sysreqs": "libssl-dev",
  "Repository": "https://voisinneg.r-universe.dev",
  "Date/Publication": "2023-06-06 08:05:26 UTC",
  "RemoteUrl": "https://github.com/voisinneg/queryup",
  "RemoteRef": "HEAD",
  "RemoteSha": "efbbd06dab2a6f65b5777d0a7fee0943c8d460a6",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-10-01 09:42:29 UTC",
    "User": "root"
  },
  "Author": "Guillaume Voisinne [aut, cre] (ORCID:\n<https://orcid.org/0000-0003-3922-2121>)",
  "_user": "voisinneg",
  "_type": "src",
  "_file": "queryup_1.0.5.tar.gz",
  "_fileid": "https://r2.ropensci.org/b5c28dfbeb816fa47adc3b0ce53ed7e42bc166427f808df614da02f3f70b7deb",
  "_filesize": 151065,
  "_sha256": "b5c28dfbeb816fa47adc3b0ce53ed7e42bc166427f808df614da02f3f70b7deb",
  "_expires": "2027-01-09T09:47:42.000Z",
  "_created": "2026-10-01T09:42:29.000Z",
  "_published": "2026-10-01T09:47:44.111Z",
  "_jobs": [
    {
      "job": 110311231049,
      "time": 194,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "11153032003"
    },
    {
      "job": 110311231275,
      "time": 184,
      "config": "linux-release-x86_64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "11152188536"
    },
    {
      "job": 110311231124,
      "time": 275,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "11153150990"
    },
    {
      "job": 110311231075,
      "time": 196,
      "config": "macos-release-arm64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "11152402932"
    },
    {
      "job": 110309463797,
      "time": 303,
      "config": "source",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "11152492893"
    },
    {
      "job": 110311230983,
      "time": 125,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "11153325012"
    },
    {
      "job": 110311231231,
      "time": 119,
      "config": "windows-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "11152138149"
    },
    {
      "job": 110311231226,
      "time": 116,
      "config": "windows-oldrel-x86_64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "11152352844"
    },
    {
      "job": 110311231129,
      "time": 123,
      "config": "windows-release-x86_64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "11153130950"
    }
  ],
  "_host": "GitHub-Actions",
  "_buildurl": "https://github.com/r-universe/voisinneg/actions/runs/36843915371",
  "_status": "success",
  "_upstream": "https://github.com/voisinneg/queryup",
  "_commit": {
    "id": "efbbd06dab2a6f65b5777d0a7fee0943c8d460a6",
    "author": "VoisinneG <voisinne@gmail.com>",
    "committer": "VoisinneG <voisinne@gmail.com>",
    "message": "update CRAN-SUBMISSION\n",
    "time": 1686038726
  },
  "_maintainer": {
    "name": "Guillaume Voisinne",
    "email": "voisinne@gmail.com",
    "login": "voisinneg",
    "description": "",
    "uuid": 37186682,
    "orcid": "0000-0003-3922-2121"
  },
  "_distro": "resolute",
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 2.10",
      "role": "Depends"
    },
    {
      "package": "httr",
      "role": "Imports"
    },
    {
      "package": "jsonlite",
      "role": "Imports"
    },
    {
      "package": "utils",
      "role": "Imports"
    },
    {
      "package": "covr",
      "role": "Suggests"
    },
    {
      "package": "knitr",
      "role": "Suggests"
    },
    {
      "package": "xml2",
      "role": "Suggests"
    },
    {
      "package": "rmarkdown",
      "role": "Suggests"
    },
    {
      "package": "testthat",
      "version": ">= 3.0.0",
      "role": "Suggests"
    }
  ],
  "_owner": "voisinneg",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [],
  "_tags": [],
  "_topics": [
    "proteomics",
    "rest-api",
    "uniprot"
  ],
  "_stars": 4,
  "_contributors": [
    {
      "user": "voisinneg",
      "count": 73,
      "uuid": 37186682
    }
  ],
  "_userbio": {
    "uuid": 37186682,
    "type": "user",
    "name": "Guillaume Voisinne",
    "followers": 3
  },
  "_downloads": {
    "count": 276,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/queryup"
  },
  "_devurl": "https://github.com/voisinneg/queryup",
  "_searchresults": 25,
  "_rbuild": "4.6.1",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/manual.pdf",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "extra/queryup.html",
    "extra/readme.html",
    "extra/readme.md"
  ],
  "_homeurl": "https://github.com/voisinneg/queryup",
  "_realowner": "voisinneg",
  "_cranurl": true,
  "_releases": [
    {
      "version": "1.0.0",
      "date": "2022-09-12"
    },
    {
      "version": "1.0.1",
      "date": "2022-11-10"
    },
    {
      "version": "1.0.2",
      "date": "2023-02-10"
    },
    {
      "version": "1.0.3",
      "date": "2023-03-27"
    },
    {
      "version": "1.0.4",
      "date": "2023-04-04"
    },
    {
      "version": "1.0.5",
      "date": "2023-06-05"
    }
  ],
  "_exports": [
    "get_uniprot_data",
    "query_uniprot"
  ],
  "_datasets": [
    {
      "name": "query_fields",
      "title": "Available query fields.",
      "object": "query_fields",
      "class": [
        "data.frame"
      ],
      "fields": [
        "field",
        "example",
        "description"
      ],
      "rows": 44,
      "table": true,
      "tojson": true
    },
    {
      "name": "return_fields",
      "title": "Available return fields (\"columns\").",
      "object": "return_fields",
      "class": [
        "data.frame"
      ],
      "fields": [
        "field",
        "label"
      ],
      "rows": 287,
      "table": true,
      "tojson": true
    },
    {
      "name": "uniprot_entries",
      "title": "Information for 1000 UniProt entries from the organism Mus musculus",
      "object": "uniprot_entries",
      "class": [
        "data.frame"
      ],
      "fields": [
        "Entry",
        "Entry Name",
        "Gene Names",
        "Organism (ID)",
        "Reviewed"
      ],
      "rows": 1000,
      "table": true,
      "tojson": true
    }
  ],
  "_help": [
    {
      "page": "build_query_url",
      "title": "Accessory function used to build the query url",
      "topics": [
        "build_query_url"
      ]
    },
    {
      "page": "clean_query",
      "title": "Accessory function removing invalid values from a query",
      "topics": [
        "clean_query"
      ]
    },
    {
      "page": "get_uniprot_data",
      "title": "Retrieve data from UniProt using UniProt's REST API",
      "topics": [
        "get_uniprot_data"
      ]
    },
    {
      "page": "parse_messages",
      "title": "Accessory function retrieving invalid values from messages returned by the UniProt API.",
      "topics": [
        "parse_messages"
      ]
    },
    {
      "page": "query_fields",
      "title": "Available query fields.",
      "topics": [
        "query_fields"
      ]
    },
    {
      "page": "query_uniprot",
      "title": "Retrieve data from UniProt using UniProt's REST API.",
      "topics": [
        "query_uniprot"
      ]
    },
    {
      "page": "return_fields",
      "title": "Available return fields (\"columns\").",
      "topics": [
        "return_fields"
      ]
    },
    {
      "page": "uniprot_entries",
      "title": "Information for 1000 UniProt entries from the organism Mus musculus",
      "topics": [
        "uniprot_entries"
      ]
    }
  ],
  "_readme": "https://github.com/voisinneg/queryup/raw/HEAD/README.md",
  "_rundeps": [
    "askpass",
    "curl",
    "httr",
    "jsonlite",
    "mime",
    "openssl",
    "R6",
    "sys"
  ],
  "_vignettes": [
    {
      "source": "queryup.Rmd",
      "filename": "queryup.html",
      "title": "Introduction to queryup",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Queries",
        "Columns",
        "Combining query fields",
        "Multiple items per query field",
        "Queries with invalid entries",
        "Long queries",
        "Protein-protein interactions"
      ],
      "created": "2022-09-09 09:43:17",
      "modified": "2023-04-03 13:57:25",
      "commits": 2
    }
  ],
  "_score": 4.698970004336019,
  "_indexed": true,
  "_nocasepkg": "queryup",
  "_universes": [
    "voisinneg"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.0.5",
      "date": "2026-10-01T09:44:49.000Z",
      "distro": "resolute",
      "commit": "efbbd06dab2a6f65b5777d0a7fee0943c8d460a6",
      "fileid": "https://r2.ropensci.org/9aa3d89c9d9abba963e949edfd08c6888c8a58a08ae047a016d0a57d230e6c6f",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/voisinneg/actions/runs/36843915371"
    },
    {
      "r": "4.6.1",
      "os": "linux",
      "version": "1.0.5",
      "date": "2026-10-01T09:44:43.000Z",
      "distro": "resolute",
      "commit": "efbbd06dab2a6f65b5777d0a7fee0943c8d460a6",
      "fileid": "https://r2.ropensci.org/f2d53e160fe3db2d147bc25dd5bdbbf09086cdac39ddb9d20680524a915f16d2",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/voisinneg/actions/runs/36843915371"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "1.0.5",
      "date": "2026-10-01T09:45:44.000Z",
      "commit": "efbbd06dab2a6f65b5777d0a7fee0943c8d460a6",
      "fileid": "https://r2.ropensci.org/d01ed2b69dac88aaeb2c4561080d7c40be3cf2ac91b120b02a344d202c104f47",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/voisinneg/actions/runs/36843915371"
    },
    {
      "r": "4.6.1",
      "os": "mac",
      "version": "1.0.5",
      "date": "2026-10-01T09:44:17.000Z",
      "commit": "efbbd06dab2a6f65b5777d0a7fee0943c8d460a6",
      "fileid": "https://r2.ropensci.org/f70f932e2d7f7adc2ce97adc791d1635abb8955f79a162be8116c3c3cdf9674a",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/voisinneg/actions/runs/36843915371"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "1.0.5",
      "date": "2026-10-01T09:44:45.000Z",
      "commit": "efbbd06dab2a6f65b5777d0a7fee0943c8d460a6",
      "fileid": "https://r2.ropensci.org/caa8cc56be5c88d01e38bd84cb20bf250a20dba5a8c2244ac2a98f2568a4b1c5",
      "status": "success",
      "buildurl": "https://github.com/r-universe/voisinneg/actions/runs/36843915371"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "1.0.5",
      "date": "2026-10-01T09:43:32.000Z",
      "commit": "efbbd06dab2a6f65b5777d0a7fee0943c8d460a6",
      "fileid": "https://r2.ropensci.org/0e98932761ff4312e1edac1e53d5e87064739559d3cdd677562ec5bc03d5cdd9",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/voisinneg/actions/runs/36843915371"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "1.0.5",
      "date": "2026-10-01T09:43:31.000Z",
      "commit": "efbbd06dab2a6f65b5777d0a7fee0943c8d460a6",
      "fileid": "https://r2.ropensci.org/e44d3bc4417904049849033d7d1a57ebc0948507c0eee2362cafc5dfa16d2048",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/voisinneg/actions/runs/36843915371"
    },
    {
      "r": "4.6.1",
      "os": "win",
      "version": "1.0.5",
      "date": "2026-10-01T09:43:36.000Z",
      "commit": "efbbd06dab2a6f65b5777d0a7fee0943c8d460a6",
      "fileid": "https://r2.ropensci.org/f62382ef933f5e9537f8029bb248b98145a16ef7a2e2fc02df06bf268c00e4ce",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/voisinneg/actions/runs/36843915371"
    }
  ]
}